1HV1 Hydrolase date Jan 05, 2001
title Dissecting Electrostatic Interactions And The Ph-Dependent A A Family 11 Glycosidase
authors M.D.Joshi, G.Sidhu, J.E.Nielsen, G.D.Brayer, S.G.Withers, L.P.Mci
compound source
Molecule: Endo-1,4-Beta-Xylanase
Chain: A
Fragment: Q127a_bcx
Synonym: Xylanase, 1,4-Beta-D-Xylan Xylanohydrolase
Ec: 3.2.1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Circulans
Organism_taxid: 1397
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcw
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.994 52.711 78.202 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1BCX, 1BVV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase., Joshi MD, Sidhu G, Nielsen JE, Brayer GD, Withers SG, McIntosh LP, Biochemistry 2001 Aug 28;40(34):10115-39. PMID:11513590
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (1hv1.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1HV1
  • Likely Quarternary Molecular Structure file(s) for 1HV1
  • Structure Factors (112 Kb)
  • Retrieve 1HV1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HV1 from S2C, [Save to disk]
  • Re-refined 1hv1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HV1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HV1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HV1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hv1a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hv1_A] [1hv1]
  • SWISS-PROT database: [P09850]
  • Domain organization of [XYNA_BACCI] by SWISSPFAM
  • Other resources with information on 1HV1
  • Community annotation for 1HV1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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