1IO3 Electron Transport date Jan 06, 2001
title Crystal Structure Of Ferricytochrome C2 From Rhodopseudomona
authors K.Miki, S.Sogabe
compound source
Molecule: Cytochrome C2
Chain: A
 Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079
symmetry Space Group: P 32 2 1
R_factor 0.208 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.970 75.970 40.370 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand HEC enzyme
related structures by homologous chain: 1CO6, 1CRY
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceCrystal structure of the oxidized cytochrome c(2) from Blastochloris viridis., Sogabe S, Miki K, FEBS Lett 2001 Mar 2;491(3):174-9. PMID:11240122
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1io3.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1IO3
  • CSU: Contacts of Structural Units for 1IO3
  • Likely Quarternary Molecular Structure file(s) for 1IO3
  • Structure Factors (88 Kb)
  • Retrieve 1IO3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IO3 from S2C, [Save to disk]
  • Re-refined 1io3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1IO3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1IO3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IO3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1io3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1io3_A] [1io3]
  • SWISS-PROT database: [P00083]
  • Domain organization of [CYC2_RHOVI] by SWISSPFAM
    • Other resources with information on 1IO3
  • Community annotation for 1IO3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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