1IXV	Protein Binding	date	Jul 09, 2002
title	Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyri Interactor Of Rb And Cdk46
authors	B.Padmanabhan, N.Adachi, K.Kataoka, M.Horikoshi
compound		source
Molecule: Probable 26s Proteasome Regulatory Subunit P28 Chain: A Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b-Nas6p
symmetry	Space Group: P 21 21 21	R_factor 0.194 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.433 61.736 98.095 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
related structures	by homologous chain: 1WG0
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the homolog of the oncoprotein gankyrin, an interactor of Rb and CDK4/6., Padmanabhan B, Adachi N, Kataoka K, Horikoshi M, J Biol Chem 2004 Jan 9;279(2):1546-52. Epub 2003 Oct 28. PMID:14583612

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (1ixv.pdb1.gz) 38 Kb CSU: Contacts of Structural Units for 1IXV Likely Quarternary Molecular Structure file(s) for 1IXV Retrieve 1IXV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IXV from S2C, [Save to disk]

View 1IXV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IXV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IXV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ixva_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ixv] [1ixv_A] SWISS-PROT database: [P50086] Domain organization of [PSD10_YEAST] by SWISSPFAM Domain found in 1IXV: [ANK ] by SMART

Other resources with information on 1IXV

Community annotation for 1IXV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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