1JDV Transferase date Jun 15, 2001
title Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine Phospho Complexed With Adenosine And Sulfate Ion
authors T.C.Appleby, I.I.Mathews, M.Porcelli, G.Cacciapuoti, S.E.Ealick
compound source
Molecule: 5'-Methylthioadenosine Phosphorylase
Chain: A, B, C, D, E, F
Synonym: Mta Phosphorylase; Mtap
Ec: 2.4.2.28
Engineered: Yes
 Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.218 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.000 87.500 102.000 90.00 119.99 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ADN, SO4 enzyme Transferase E.C.2.4.2.28 BRENDA
related structures by homologous chain: 1JDT, 1JP7
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceThree-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus., Appleby TC, Mathews II, Porcelli M, Cacciapuoti G, Ealick SE, J Biol Chem 2001 Oct 19;276(42):39232-42. PMID:11489901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (1jdv.pdb1.gz) 217 Kb
  • LPC: Ligand-Protein Contacts for 1JDV
  • CSU: Contacts of Structural Units for 1JDV
  • Likely Quarternary Molecular Structure file(s) for 1JDV
  • Retrieve 1JDV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JDV from S2C, [Save to disk]
    • View 1JDV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JDV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JDV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jdva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jdvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jdvc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1jdvd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1jdve_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1jdvf_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jdv] [1jdv_B] [1jdv_A] [1jdv_F] [1jdv_D] [1jdv_E] [1jdv_C]
  • SWISS-PROT database: [P50389]
  • Domain organization of [MTAP_SULSO] by SWISSPFAM
    • Other resources with information on 1JDV
  • Community annotation for 1JDV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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