1JUY Ligase date Sep 25, 1996
title Refined Crystal Structure Of Adenylosuccinate Synthetase Fro Escherichia Coli Complexed With Hydantocidin 5'-Phosphate G Hpo4(2-), Mg2+, And Hadacidin
authors B.W.Poland, S.F.Lee, M.V.Subramanian, D.L.Siehl, R.J.Anderson, H R.B.Honzatko
compound source
Molecule: Adenylosuccinate Synthetase
Chain: A
Ec: 6.3.4.4
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Pur A Strain H1238 (A Gift From Dr. B. Bachman (Gen Center, Yale University));
Atcc: 5408, Coli Genetic Stock Center
symmetry Space Group: P 32 2 1
R_factor 0.195 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.400 80.400 158.410 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand GDP, H5P, HDA, MG, PI enzyme Ligase E.C.6.3.4.4 BRENDA
related structures by homologous chain: 1KJX, 1KKF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefined crystal structure of adenylosuccinate synthetase from Escherichia coli complexed with hydantocidin 5'-phosphate, GDP, HPO4(2-), Mg2+, and hadacidin., Poland BW, Lee SF, Subramanian MV, Siehl DL, Anderson RJ, Fromm HJ, Honzatko RB, Biochemistry 1996 Dec 10;35(49):15753-9. PMID:8961938
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1juy.pdb1.gz) 183 Kb
  • LPC: Ligand-Protein Contacts for 1JUY
  • CSU: Contacts of Structural Units for 1JUY
  • Likely Quarternary Molecular Structure file(s) for 1JUY
  • Structure Factors (219 Kb)
  • Retrieve 1JUY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JUY from S2C, [Save to disk]
  • Re-refined 1juy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JUY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JUY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JUY, from MSDmotif at EBI
  • Genome occurence of 1JUY's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1juy__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1juy] [1juy_A]
  • SWISS-PROT database: [P0A7D4]
  • Domain organization of [PURA_ECOLI] by SWISSPFAM
  • Domain found in 1JUY: [Adenylsucc_synt ] by SMART
  • Other resources with information on 1JUY
  • Community annotation for 1JUY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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