1JY2	Blood Clotting	date	Sep 10, 2001
title	Crystal Structure Of The Central Region Of Bovine Fibrinogen Fragment) At 1.4 Angstroms Resolution
authors	J.Madrazo, J.H.Brown, S.Litvinovich, R.Dominguez, S.Yakovlev, L.M C.Cohen
compound		source
Molecule: Fibrinogen Alpha Chain Chain: N, Q		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Other_details: Proteolytic Fragment
Molecule: Fibrinogen Beta Chain Chain: O, R		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Other_details: Proteolytic Fragment
Molecule: Fibrinogen Gamma-B Chain Chain: P, S		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Other_details: Proteolytic Fragment
symmetry	Space Group: P 1 21 1	R_factor 0.216 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.376 66.222 50.658 90.00 106.55 90.00
method	X-Ray Diffraction	resolution	1.40 Å
note	1JY2 is a representative structure
related structures	by homologous chain: 1JY3
Gene Ontology	Chain Function Process Component O, R Q, N S, P
Primary reference	Crystal structure of the central region of bovine fibrinogen (E5 fragment) at 1.4-A resolution., Madrazo J, Brown JH, Litvinovich S, Dominguez R, Yakovlev S, Medved L, Cohen C, Proc Natl Acad Sci U S A 2001 Oct 9;98(21):11967-72. PMID:11593005

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (1jy2.pdb1.gz) 50 Kb CSU: Contacts of Structural Units for 1JY2 Likely Quarternary Molecular Structure file(s) for 1JY2 Structure Factors (451 Kb) Retrieve 1JY2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JY2 from S2C, [Save to disk] Re-refined 1jy2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JY2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JY2

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1JY2 1JY2N 1JY2O 1JY2P 1JY2Q 1JY2R 1JY2S from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JY2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jy2n_, region N [Jmol] [rasmolscript] [script source]     - Domain d1jy2o_, region O [Jmol] [rasmolscript] [script source]     - Domain d1jy2p_, region P [Jmol] [rasmolscript] [script source]     - Domain d1jy2q_, region Q [Jmol] [rasmolscript] [script source]     - Domain d1jy2r_, region R [Jmol] [rasmolscript] [script source]     - Domain d1jy2s_, region S [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jy2_P] [1jy2_N] [1jy2] [1jy2_Q] [1jy2_O] [1jy2_R] [1jy2_S] SWISS-PROT database: [P02672] [P02676] [P12799] Domain organization of [FIBA_BOVIN] [FIBB_BOVIN] [FIBG_BOVIN] by SWISSPFAM

Other resources with information on 1JY2

Community annotation for 1JY2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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