1K0D Gene Regulation date Sep 19, 2001
title Ure2p In Complex With Glutathione
authors L.Bousset, H.Belrhali, R.Melki, S.Morera
compound source
Molecule: Ure2 Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.679 122.279 166.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GSH enzyme
note 1K0D is a representative structure
related structures by homologous chain: 1HQO
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures of the yeast prion Ure2p functional region in complex with glutathione and related compounds., Bousset L, Belrhali H, Melki R, Morera S, Biochemistry 2001 Nov 13;40(45):13564-73. PMID:11695904
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (1k0d.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (1k0d.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 1K0D
  • CSU: Contacts of Structural Units for 1K0D
  • Likely Quarternary Molecular Structure file(s) for 1K0D
  • Structure Factors (479 Kb)
  • Retrieve 1K0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K0D from S2C, [Save to disk]
  • Re-refined 1k0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1K0D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1K0D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K0D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k0da2, region A:109-200 [Jmol] [rasmolscript] [script source]
        - Domain d1k0da1, region A:201-351 [Jmol] [rasmolscript] [script source]
        - Domain d1k0db2, region B:100-200 [Jmol] [rasmolscript] [script source]
        - Domain d1k0db1, region B:201-353 [Jmol] [rasmolscript] [script source]
        - Domain d1k0dc2, region C:100-200 [Jmol] [rasmolscript] [script source]
        - Domain d1k0dc1, region C:201-354 [Jmol] [rasmolscript] [script source]
        - Domain d1k0dd1, region D:201-353 [Jmol] [rasmolscript] [script source]
        - Domain d1k0dd2, region D:99-200 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k0d_C] [1k0d_D] [1k0d] [1k0d_A] [1k0d_B]
  • SWISS-PROT database: [P23202]
  • Domain organization of [URE2_YEAST] by SWISSPFAM
    • Other resources with information on 1K0D
  • Community annotation for 1K0D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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