1LM8	Transcription	date	Apr 30, 2002
title	Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex
authors	J.H.Min, H.Yang, M.Ivan, F.Gertler, W.G.Kaelin Jr., N.P.Pavletic
compound		source
Molecule: Elongin B Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-3
Molecule: Elongin C Chain: C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbb75
Molecule: Von Hippel-Lindau Disease Tumor Suppressor Chain: V Synonym: Vhl Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-3
Molecule: Hypoxia-Inducible Factor 1 Alpha Chain: H Fragment: Residues 556-575 Synonym: Hif-1 Alpha, Arnt Interacting Protein, Mop1 Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The Of The Protein Is Naturally Found In Homo Sapiens.
symmetry	Space Group: P 43 21 2	R_factor 0.196 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.500 59.500 245.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	HYP	enzyme
note	1LM8 is a representative structure
related structures	by homologous chain: 1LQB
Gene Ontology	Chain Function Process Component B C
Primary reference	Structure of an HIF-1alpha -pVHL complex: hydroxyproline recognition in signaling., Min JH, Yang H, Ivan M, Gertler F, Kaelin WG Jr, Pavletich NP, Science 2002 Jun 7;296(5574):1886-9. PMID:12004076

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (1lm8.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 1LM8 CSU: Contacts of Structural Units for 1LM8 Likely Quarternary Molecular Structure file(s) for 1LM8 Retrieve 1LM8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LM8 from S2C, [Save to disk]

View 1LM8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LM8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LM8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1lm8b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1lm8c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1lm8v_, region V [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lm8_H] [1lm8_B] [1lm8_V] [1lm8] [1lm8_C] SWISS-PROT database: [Q15370] [Q15369] [Q16665] [P40337] Domain organization of [ELOB_HUMAN] [ELOC_HUMAN] [HIF1A_HUMAN] [VHL_HUMAN] by SWISSPFAM Domains found in 1LM8: [Skp1] [UBQ ] by SMART

Other resources with information on 1LM8

Community annotation for 1LM8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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