1MPL	Hydrolase	date	Sep 12, 2002
title	Crystal Structure Of Phosphonate-Inhibited D-Ala-D-Ala Pepti Reveals An Analog Of A Tetrahedral Transition State
authors	N.R.Silvaggi, J.W.Anderson, S.R.Brinsmade, R.F.Pratt, J.A.Kelly
compound		source
Molecule: D-Alanyl-D-Alanine Carboxypeptidase Chain: A Fragment: Dd-Peptidase Synonym: D-Alanyl-D-Alanine Transpeptidase, Dd- Peptidase, Carboxypeptidase; Ec: 3.4.16.4		Organism_scientific: Streptomyces Sp. Organism_taxid: 31952 Strain: R61
symmetry	Space Group: P 21 21 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.900 66.760 100.011 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.12 Å
ligand	GOL, RE1	enzyme	Hydrolase E.C.3.4.16.4 BRENDA
related structures	by homologous chain: 1PWC, 1SCW
Gene Ontology	Chain Function Process Component A
Primary reference	The crystal structure of phosphonate-inhibited D-Ala-D-Ala peptidase reveals an analogue of a tetrahedral transition state., Silvaggi NR, Anderson JW, Brinsmade SR, Pratt RF, Kelly JA, Biochemistry 2003 Feb 11;42(5):1199-208. PMID:12564922

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk] Biological Unit Coordinates (1mpl.pdb1.gz) 128 Kb LPC: Ligand-Protein Contacts for 1MPL CSU: Contacts of Structural Units for 1MPL Likely Quarternary Molecular Structure file(s) for 1MPL Structure Factors (2163 Kb) Retrieve 1MPL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MPL from S2C, [Save to disk] Re-refined 1mpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1MPL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MPL

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1MPL from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MPL, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mpla_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mpl_A] [1mpl] SWISS-PROT database: [P15555] Domain organization of [DAC_STRSR] by SWISSPFAM

Other resources with information on 1MPL

Community annotation for 1MPL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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