1N4H	Hormone Growth Factor	date	Oct 31, 2002
title	Characterization Of Ligands For The Orphan Nuclear Receptor
authors	C.Stehlin-Gaon, D.Willmann, S.Sanglier, A.Van Dorsselaer, J.P.R D.Moras, R.Schuele
compound		source
Molecule: Nuclear Receptor Ror-Beta Chain: A Fragment: Ligand-Binding Domain Synonym: Nuclear Receptor Rzr-Beta Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Rzr-Beta Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_tissue: Brain Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Steroid Receptor Coactivator-1 Chain: B Fragment: Nr-2 Box Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Homo Sapiens (Human).
symmetry	Space Group: P 21 21 21	R_factor 0.217 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.199 58.125 106.039 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	REA	enzyme
related structures	by homologous chain: 1K4W, 1S0X
Gene Ontology	Chain Function Process Component A
Primary reference	All-trans retinoic acid is a ligand for the orphan nuclear receptor ROR beta., Stehlin-Gaon C, Willmann D, Zeyer D, Sanglier S, Van Dorsselaer A, Renaud JP, Moras D, Schule R, Nat Struct Biol 2003 Oct;10(10):820-5. Epub 2003 Sep 7. PMID:12958591

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (1n4h.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 1N4H CSU: Contacts of Structural Units for 1N4H Likely Quarternary Molecular Structure file(s) for 1N4H Structure Factors (262 Kb) Retrieve 1N4H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N4H from S2C, [Save to disk] Re-refined 1n4h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1N4H in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1N4H

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N4H, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n4ha_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n4h] [1n4h_B] [1n4h_A] SWISS-PROT database: [Q15788] [P45446] Domain organization of [NCOA1_HUMAN] [RORB_RAT] by SWISSPFAM Domain found in 1N4H: [HOLI ] by SMART

Other resources with information on 1N4H

Community annotation for 1N4H at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---