1NA4 Virus date Nov 26, 2002
title The Structure Of Immature Yellow Fever Virus Particle
authors Y.Zhang, J.Corver, P.R.Chipman, E.Lenches, W.Zhang, S.V.Pletnev, D T.S.Baker, J.H.Strauss, R.J.Kuhn, M.G.Rossmann
compound source
Molecule: Major Envelope Protein E
Chain: A, B, C
 Organism_scientific: Yellow Fever Virus
Organism_taxid: 11089
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution NULL Å
related structures by homologous chain: 1URZ
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructures of immature flavivirus particles., Zhang Y, Corver J, Chipman PR, Zhang W, Pletnev SV, Sedlak D, Baker TS, Strauss JH, Kuhn RJ, Rossmann MG, EMBO J 2003 Jun 2;22(11):2604-13. PMID:12773377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1na4.pdb1.gz) 1485 Kb
  • CSU: Contacts of Structural Units for 1NA4
  • Likely Quarternary Molecular Structure file(s) for 1NA4
  • Retrieve 1NA4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NA4 from S2C, [Save to disk]
    • View 1NA4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NA4
  • VIPERdb: visual, structural and computational analysis of 1NA4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NA4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1na4a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1na4b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1na4c_, region C [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1na4] [1na4_A] [1na4_C] [1na4_B]
  • SWISS-PROT database: [P14336]
  • Belongs to the viral pore-forming membrane fusion protein-3 (vmfp3) family according to TCDB.
  • Domain organization of [POLG_TBEVW] by SWISSPFAM
    • Other resources with information on 1NA4
  • Community annotation for 1NA4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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