1NDT	Oxidoreductase	date	Oct 28, 1998
title	Nitrite Reductase From Alcaligenes Xylosoxidans
authors	F.E.Dodd, J.Vanbeeumen, R.R.Eady, S.S.Hasnain
compound		source
Molecule: Protein (Nitrite Reductase) Chain: A Ec: 1.7.99.3 Other_details: Copper, Chloride		Organism_scientific: Achromobacter Xylosoxidans Organism_taxid: 85698 Strain: Xylosoxidans Atcc: Ncimb 11015 Collection: Ncimb 11015 Cellular_location: Periplasm
symmetry	Space Group: P 63	R_factor 0.167 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.236 81.236 100.034 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CL, CU	enzyme	Oxidoreductase E.C.1.7.99.3 BRENDA
related structures	by homologous chain: 1BQ5, 2NRD
Gene Ontology	Chain Function Process Component A
Primary reference	X-ray structure of a blue-copper nitrite reductase in two crystal forms. The nature of the copper sites, mode of substrate binding and recognition by redox partner., Dodd FE, Van Beeumen J, Eady RR, Hasnain SS, J Mol Biol 1998 Sep 18;282(2):369-82. PMID:9735294

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (1ndt.pdb1.gz) 158 Kb LPC: Ligand-Protein Contacts for 1NDT CSU: Contacts of Structural Units for 1NDT Likely Quarternary Molecular Structure file(s) for 1NDT Structure Factors (193 Kb) Retrieve 1NDT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NDT from S2C, [Save to disk] Re-refined 1ndt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1NDT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NDT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NDT, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ndta1, region A:1-159 [Jmol] [rasmolscript] [script source]     - Domain d1ndta2, region A:160-336 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ndt_A] [1ndt] SWISS-PROT database: [O68601] Domain organization of [O68601_ALCXX] by SWISSPFAM

Other resources with information on 1NDT

Community annotation for 1NDT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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