1O5P Antibiotic date Oct 04, 2003
title Solution Structure Of Holo-Neocarzinostatin
authors H.Takashima, T.Ishino, T.Yoshida, K.Hasuda, T.Ohkubo, Y.Kobayashi
compound source
Molecule: Neocarzinostatin
Chain: A
Synonym: Ncs, Mitomalcin, Mmc
 Organism_scientific: Streptomyces Carzinostaticus
Organism_taxid: 1897
Other_details: Protein Was Isotope Labeled By Pre-Enriched As Amino Acide Source.
methodSolution NMR
ligand CHR enzyme
related structures by homologous chain: 1J5H, 1NCO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution NMR structure investigation for releasing mechanism of neocarzinostatin chromophore from the holoprotein., Takashima H, Yoshida T, Ishino T, Hasuda K, Ohkubo T, Kobayashi Y, J Biol Chem 2005 Mar 25;280(12):11340-6. Epub 2005 Jan 7. PMID:15640161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1541 Kb) [Save to disk]
  • Biological Unit Coordinates (1o5p.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 1O5P
  • CSU: Contacts of Structural Units for 1O5P
  • Original NMR restraints for 1O5P from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1O5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O5P from S2C, [Save to disk]
    • View 1O5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O5P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O5P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o5pa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o5p_A] [1o5p]
  • SWISS-PROT database: [P0A3R9]
  • Domain organization of [NCZS_STRCZ] by SWISSPFAM
    • Other resources with information on 1O5P
  • Community annotation for 1O5P at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science