1OCC Oxidoreductase (Cytochrome(C)-Oxygen) date Apr 18, 1996
title Structure Of Bovine Heart Cytochrome C Oxidase At The Fully State
authors T.Tsukihara, H.Aoyama, E.Yamashita, T.Tomizaki, H.Yamaguchi, K.Sh Itoh, R.Nakashima, R.Yaono, S.Yoshikawa
compound source
Molecule: Cytochrome C Oxidase
Chain: A, N
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: B, O
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: C, P
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: D, Q
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: E, R
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: F, S
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: G, T
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: H, U
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: I, V
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: J, W
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: K, X
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: L, Y
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: M, Z
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Multi Component Protein Com Is A Homo Dimer. One Monomer Is Composed Of 13 Different Su Six Metal Centers, Heme A, Heme A3, Cua, Cub, Mg And Zn.
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
189.100 210.500 178.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CU, HEA, MG, ZN enzyme Oxidoreductase E.C.1.9.3.1 BRENDA
related structures by homologous chain: 1OCO, 1OCR
Gene
Ontology
ChainFunctionProcessComponent
C, P
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • E, R


    H, U


    J, W


    K, X


    N, A


    O, B
  • cytochrome-c oxidase activit...


    • Q, D


    S, F


    T, G


    V, I
  • cytochrome-c oxidase activit...


    • Y, L


    Z, M


    Primary referenceThe whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A., Tsukihara T, Aoyama H, Yamashita E, Tomizaki T, Yamaguchi H, Shinzawa-Itoh K, Nakashima R, Yaono R, Yoshikawa S, Science 1996 May 24;272(5265):1136-44. PMID:8638158
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (585 Kb) [Save to disk]
  • Biological Unit Coordinates (1occ.pdb1.gz) 577 Kb
  • LPC: Ligand-Protein Contacts for 1OCC
  • CSU: Contacts of Structural Units for 1OCC
  • Likely Quarternary Molecular Structure file(s) for 1OCC
  • Retrieve 1OCC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OCC from S2C, [Save to disk]
    • View 1OCC in 3D
  • Proteopedia, because life has more than 2D.
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  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OCC, from MSDmotif at EBI
  • Genome occurence of 1OCC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1occa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1occb2, region B:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1occb1, region B:91-227 [Jmol] [rasmolscript] [script source]
        - Domain d1occc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1occd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1occe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1occf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1occg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1occh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1occi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1occj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1occk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1occl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1occm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1occn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1occo2, region O:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1occo1, region O:91-227 [Jmol] [rasmolscript] [script source]
        - Domain d1occp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1occq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1occr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1occs_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1occt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1occu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1occv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1occw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1occx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1occy_, region Y [Jmol] [rasmolscript] [script source]
        - Domain d1occz_, region Z [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1occ_A] [1occ_L] [1occ_M] [1occ_K] [1occ_X] [1occ_I] [1occ_B] [1occ_P] [1occ_Y] [1occ_H] [1occ_Z] [1occ_D] [1occ_T] [1occ] [1occ_G] [1occ_R] [1occ_N] [1occ_E] [1occ_V] [1occ_U] [1occ_W] [1occ_S] [1occ_Q] [1occ_C] [1occ_F] [1occ_O] [1occ_J]
  • SWISS-PROT database: [P00396] [P68530] [P00415] [P00423] [P00426] [P00428] [P04038] [P13183] [P00430] [P10175] [P07471] [P00429] [P07470]
  • Belongs to the proton-translocating cytochrome oxidase (cox) superfamily according to TCDB.
  • Domain organization of [COX1_BOVIN] [COX2_BOVIN] [COX3_BOVIN] [COX41_BOVIN] [COX5A_BOVIN] [COX5B_BOVIN] [COX6C_BOVIN] [COX7B_BOVIN] [COX7C_BOVIN] [COX8B_BOVIN] [CX6A2_BOVIN] [CX6B1_BOVIN] [CX7A1_BOVIN] by SWISSPFAM
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  • Domain movements in 1OCC from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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