1ODL	Transferase	date	Feb 19, 2003
title	Purine Nucleoside Phosphorylase From Thermus Thermophilus
authors	T.H.Tahirov, E.Inagaki, M.Miyano
compound		source
Molecule: Purine Nucleoside Phosphorylase Chain: A, B, C, D, E, F Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 43 21 2	R_factor 0.187 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 132.002 132.002 170.145 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CL, GOL, SO4	enzyme
related structures	by homologous chain: 1ODI, 1ODK
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Crystal structure of purine nucleoside phosphorylase from Thermus thermophilus., Tahirov TH, Inagaki E, Ohshima N, Kitao T, Kuroishi C, Ukita Y, Takio K, Kobayashi M, Kuramitsu S, Yokoyama S, Miyano M, J Mol Biol 2004 Apr 9;337(5):1149-60. PMID:15046984

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk] Biological Unit Coordinates (1odl.pdb1.gz) 231 Kb LPC: Ligand-Protein Contacts for 1ODL CSU: Contacts of Structural Units for 1ODL Likely Quarternary Molecular Structure file(s) for 1ODL Structure Factors (772 Kb) Retrieve 1ODL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ODL from S2C, [Save to disk] Re-refined 1odl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ODL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ODL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ODL, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1odla_, region A [Jmol] [rasmolscript] [script source]     - Domain d1odlb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1odlc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1odld_, region D [Jmol] [rasmolscript] [script source]     - Domain d1odle_, region E [Jmol] [rasmolscript] [script source]     - Domain d1odlf_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1odl_E] [1odl_B] [1odl_C] [1odl] [1odl_D] [1odl_F] [1odl_A] SWISS-PROT database: [Q5SID9] Domain organization of [Q5SID9_THET8] by SWISSPFAM

Other resources with information on 1ODL

Community annotation for 1ODL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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