1OI0	Hydrolase	date	Jun 04, 2003
title	Crystal Structure Of Af2198, A Jab1mpn Domain Protein From Archaeoglobus Fulgidus
authors	H.J.T.T.Tran, M.D.Allen, J.Lowe, M.Bycroft
compound		source
Molecule: Hypothetical Protein Af2198 Chain: A, B, C, D Synonym: Af2198 Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Organism_taxid: 2234 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: C41 Expression_system_vector: Prseta
symmetry	Space Group: P 1 21 1	R_factor 0.213 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.787 87.081 67.827 90.00 94.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	144, ZN	enzyme
note	1OI0 is a representative structure
related structures	by homologous chain: 1R5X
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure of the Jab1/MPN domain and its implications for proteasome function., Tran HJ, Allen MD, Lowe J, Bycroft M, Biochemistry 2003 Oct 7;42(39):11460-5. PMID:14516197

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (1oi0.pdb1.gz) 21 Kb Biological Unit Coordinates (1oi0.pdb2.gz) 21 Kb Biological Unit Coordinates (1oi0.pdb3.gz) 20 Kb Biological Unit Coordinates (1oi0.pdb4.gz) 21 Kb LPC: Ligand-Protein Contacts for 1OI0 CSU: Contacts of Structural Units for 1OI0 Likely Quarternary Molecular Structure file(s) for 1OI0 Structure Factors (417 Kb) Retrieve 1OI0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OI0 from S2C, [Save to disk] Re-refined 1oi0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OI0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OI0

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1OI0 1OI0A 1OI0B 1OI0C 1OI0D from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OI0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1oi0a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1oi0b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1oi0c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1oi0d_, region D [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1oi0_A] [1oi0_D] [1oi0_B] [1oi0] [1oi0_C] SWISS-PROT database: [O28085] Domain organization of [O28085_ARCFU] by SWISSPFAM Domain found in 1OI0: [JAB_MPN ] by SMART

Other resources with information on 1OI0

Community annotation for 1OI0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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