1OJ8 Hydrolase date Jul 07, 2003
title Novel And Retro Binding Modes In Cytotoxic Ribonucleases Fro Catesbeiana Of Two Crystal Structures Complexed With D(Apcp (2',5'Cpg)
authors C.J.Tsai, J.H.Liu, Y.D.Liao, L.Y.Chen, P.T.Cheng, Y.J.Sun
compound source
Molecule: Rc-Rnase6 Ribonuclease
Chain: A
Synonym: Ribonuclease
 Organism_scientific: Rana Catesbeiana
Organism_common: Bull Frog
Organism_taxid: 8400
Atcc: Aag31442
Tissue: Occyte

Molecule: 5'-D(Apcpgpap)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 43 21 2
R_factor 0.229 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.230 61.230 65.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand PCA, SO4 enzyme
related structures by homologous chain: 1OJ1
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1oj8.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1OJ8
  • CSU: Contacts of Structural Units for 1OJ8
  • Likely Quarternary Molecular Structure file(s) for 1OJ8
  • Structure Factors (83 Kb)
  • Retrieve 1OJ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OJ8 from S2C, [Save to disk]
  • Re-refined 1oj8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1OJ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OJ8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OJ8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oj8a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oj8_A] [1oj8_B] [1oj8]
  • SWISS-PROT database: [Q9DFY5]
  • Domain organization of [Q9DFY5_RANCA] by SWISSPFAM
  • Domain found in 1OJ8: [RNAse_Pc ] by SMART
    • Other resources with information on 1OJ8
  • Community annotation for 1OJ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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