1P2D	Transferase	date	Apr 15, 2003
title	Crystal Structure Of Glycogen Phosphorylase B In Complex Wit Cyclodextrin
authors	N.Pinotsis, D.D.Leonidas, E.D.Chrysina, N.G.Oikonomakos, I.M.Mav
compound		source
Molecule: Glycogen Phosphorylase, Muscle Form Chain: A Synonym: Glycogen Phosphorylase B Ec: 2.4.1.1		Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986
symmetry	Space Group: P 43 21 2	R_factor 0.193 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.873 128.873 116.179 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.94 Å
ligand	GLC, PLP BindingDB	enzyme	Transferase E.C.2.4.1.1 BRENDA
related structures	by homologous chain: 1KTI, 1XKX
Gene Ontology	Chain Function Process Component A
Primary reference	The binding of beta- and gamma-cyclodextrins to glycogen phosphorylase b: kinetic and crystallographic studies., Pinotsis N, Leonidas DD, Chrysina ED, Oikonomakos NG, Mavridis IM, Protein Sci 2003 Sep;12(9):1914-24. PMID:12930991

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk] Biological Unit Coordinates (1p2d.pdb1.gz) 272 Kb LPC: Ligand-Protein Contacts for 1P2D CSU: Contacts of Structural Units for 1P2D Likely Quarternary Molecular Structure file(s) for 1P2D Retrieve 1P2D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P2D from S2C, [Save to disk]

View 1P2D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P2D

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P2D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p2da_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p2d] [1p2d_A] SWISS-PROT database: [P00489] Domain organization of [PYGM_RABIT] by SWISSPFAM

Other resources with information on 1P2D

Community annotation for 1P2D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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