1PD5	Transferase	date	May 19, 2003
title	Crystal Structure Of E.Coli Chloramphenicol Acetyltransferas At 2.5 Angstrom Resolution
authors	A.Roidis, M.Kokkinidis
compound		source
Molecule: Chloramphenicol Acetyltransferase Chain: A, B, C, D, E, F, G, H, I, J, K, L Ec: 2.3.1.28 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Cat Or Hcm1.206 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Le392 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbr322
symmetry	Space Group: P 1 21 1	R_factor 0.195 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.739 129.702 117.984 90.00 108.38 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand		enzyme	Transferase E.C.2.3.1.28 BRENDA
related structures	by homologous chain: 1NOC, 1Q23
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (428 Kb) [Save to disk] Biological Unit Coordinates (1pd5.pdb1.gz) 109 Kb Biological Unit Coordinates (1pd5.pdb2.gz) 110 Kb Biological Unit Coordinates (1pd5.pdb3.gz) 110 Kb Biological Unit Coordinates (1pd5.pdb4.gz) 108 Kb CSU: Contacts of Structural Units for 1PD5 Likely Quarternary Molecular Structure file(s) for 1PD5 Structure Factors (858 Kb) Retrieve 1PD5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PD5 from S2C, [Save to disk] Re-refined 1pd5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PD5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PD5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PD5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pd5a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1pd5b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1pd5c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1pd5d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1pd5e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1pd5f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1pd5g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1pd5h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1pd5i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1pd5j_, region J [Jmol] [rasmolscript] [script source]     - Domain d1pd5k_, region K [Jmol] [rasmolscript] [script source]     - Domain d1pd5l_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pd5_K] [1pd5] [1pd5_C] [1pd5_F] [1pd5_I] [1pd5_B] [1pd5_G] [1pd5_A] [1pd5_D] [1pd5_H] [1pd5_L] [1pd5_E] [1pd5_J] SWISS-PROT database: [P62577] Domain organization of [CAT_ECOLX] by SWISSPFAM Domain found in 1PD5: [CAT ] by SMART

Other resources with information on 1PD5

Community annotation for 1PD5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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