1Q7C Oxidoreductase date Aug 17, 2003
title The Structure Of Betaketoacyl-[Acp] Reductase Y151f Mutant I With Nadph Fragment
authors A.C.Price, Y.M.Zhang, C.O.Rock, S.M.White
compound source
Molecule: 3-Oxoacyl-[Acyl-Carrier Protein] Reductase
Chain: A, B
Synonym: Betaketoacyl-[Acp] Reductase; 3-Ketoacyl-Acyl Carr Protein Reductase;
Ec: 1.1.1.100
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.215 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.857 95.857 131.617 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand NDP enzyme Oxidoreductase E.C.1.1.1.100 BRENDA
related structures by homologous chain: 1I01, 1Q7B
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCofactor-induced conformational rearrangements establish a catalytically competent active site and a proton relay conduit in FabG., Price AC, Zhang YM, Rock CO, White SW, Structure (Camb) 2004 Mar;12(3):417-28. PMID:15016358
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (1q7c.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 1Q7C
  • CSU: Contacts of Structural Units for 1Q7C
  • Likely Quarternary Molecular Structure file(s) for 1Q7C
  • Structure Factors (206 Kb)
  • Retrieve 1Q7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q7C from S2C, [Save to disk]
  • Re-refined 1q7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Q7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q7C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Q7C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q7ca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1q7cb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q7c] [1q7c_A] [1q7c_B]
  • SWISS-PROT database: [P0AEK2]
  • Domain organization of [FABG_ECOLI] by SWISSPFAM
  • Other resources with information on 1Q7C
  • Community annotation for 1Q7C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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