1QCG Antiviral Protein date May 04, 1999
title Low Temperature Structure Of Pokeweed Antiviral Protein
authors I.V.Kurinov, D.E.Myers, J.D.Irvin, F.M.Uckun
compound source
Molecule: Pokeweed Antiviral Protein
Chain: A, B
 Organism_scientific: Phytolacca Americana
Organism_common: American Pokeweed
Organism_taxid: 3527
symmetry Space Group: P 1
R_factor 0.191 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.680 49.090 64.560 67.95 82.90 65.37
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1D6A, 1QCJ
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • toxin activity


    • Primary referenceX-ray crystallographic analysis of the structural basis for the interactions of pokeweed antiviral protein with its active site inhibitor and ribosomal RNA substrate analogs., Kurinov IV, Myers DE, Irvin JD, Uckun FM, Protein Sci 1999 Sep;8(9):1765-72. PMID:10493577
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1qcg.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (1qcg.pdb2.gz) 56 Kb
  • CSU: Contacts of Structural Units for 1QCG
  • Likely Quarternary Molecular Structure file(s) for 1QCG
  • Retrieve 1QCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QCG from S2C, [Save to disk]
    • View 1QCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QCG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QCG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qcga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qcgb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qcg_B] [1qcg] [1qcg_A]
  • SWISS-PROT database: [P10297]
  • Domain organization of [RIP1_PHYAM] by SWISSPFAM
    • Other resources with information on 1QCG
  • Community annotation for 1QCG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science