1QZY	Hydrolase	date	Sep 18, 2003
title	Human Methionine Aminopeptidase In Complex With Bengamide Inhibitor Laf153 And Cobalt
authors	M.J.Eck, H.K.Song, A.Morollo
compound		source
Molecule: Methionine Aminopeptidase 2 Chain: A Synonym: Metap 2, Peptidase M 2, Initiation Factor 2 Associated 67 Kda Glycoprotein, P67, P67eif2; Ec: 3.4.11.18		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 2 2 21	R_factor 0.204 R_Free 0.211
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.610 99.040 101.383 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	CO, TBU, TDE	enzyme	Hydrolase E.C.3.4.11.18 BRENDA
related structures	by homologous chain: 1B59, 1B6A
Gene Ontology	Chain Function Process Component A
Primary reference	Proteomics-based target identification: bengamides as a new class of methionine aminopeptidase inhibitors., Towbin H, Bair KW, DeCaprio JA, Eck MJ, Kim S, Kinder FR, Morollo A, Mueller DR, Schindler P, Song HK, van Oostrum J, Versace RW, Voshol H, Wood J, Zabludoff S, Phillips PE, J Biol Chem 2003 Dec 26;278(52):52964-71. Epub 2003 Oct 08. PMID:14534293

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1qzy.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 1QZY CSU: Contacts of Structural Units for 1QZY Likely Quarternary Molecular Structure file(s) for 1QZY Structure Factors (885 Kb) Retrieve 1QZY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QZY from S2C, [Save to disk] Re-refined 1qzy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1QZY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1QZY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1QZY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1qzya2, region A:110-374,A:449-478 [Jmol] [rasmolscript] [script source]     - Domain d1qzya1, region A:375-448 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qzy_A] [1qzy] SWISS-PROT database: [P50579] Domain organization of [AMPM2_HUMAN] by SWISSPFAM

Other resources with information on 1QZY

Community annotation for 1QZY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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