1R33	Hydrolase	date	Sep 30, 2003
title	Golgi Alpha-Mannosidase II Complex With 5-Thio-D-Mannopyrano
authors	D.A.Kuntz, W.Xin, L.M.Kavelekar, D.R.Rose, B.M.Pinto
compound		source
Molecule: Putative Golgi Alpha-Mannosidase II Chain: A Fragment: Catalytic Domain (Residues 94-1108) Synonym: Mannosyl-Oligosaccharide 1,3-1,6-Alpha-Mannosidase Golgi Alpha-Mannosidase II, Aman II; Ec: 3.2.1.114 Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Alpha-Man-II Or Gmii Or Cg18474cg18802cg8139 Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_strain: S2 Expression_system_vector_type: Stable Transfectant Expression_system_plasmid: Pmtbip_nhis
symmetry	Space Group: P 21 21 21	R_factor 0.156 R_Free 0.185
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.838 109.911 138.891 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	LKA, MPD, NAG, ZN	enzyme	Hydrolase E.C.3.2.1.114 BRENDA
related structures	by homologous chain: 1HXK, 1PS3
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk] Biological Unit Coordinates (1r33.pdb1.gz) 185 Kb LPC: Ligand-Protein Contacts for 1R33 CSU: Contacts of Structural Units for 1R33 Likely Quarternary Molecular Structure file(s) for 1R33 Structure Factors (703 Kb) Retrieve 1R33 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1R33 from S2C, [Save to disk] Re-refined 1r33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1R33 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1R33

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1R33, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1r33a3, region A:31-411 [Jmol] [rasmolscript] [script source]     - Domain d1r33a1, region A:412-522 [Jmol] [rasmolscript] [script source]     - Domain d1r33a2, region A:523-1044 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1r33_A] [1r33] SWISS-PROT database: [Q24451] Domain organization of [MAN2_DROME] by SWISSPFAM Domain found in 1R33: [Alpha-mann_mid ] by SMART

Other resources with information on 1R33

Community annotation for 1R33 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---