1RIH	Immune System	date	Nov 17, 2003
title	Crystal Structure Of Fab 14f7, A Unique Anti-Tumor Antibody For N-Glycolyl Gm3
authors	U.Krengel, L.L.Olsson, C.Martinez, A.Talavera, G.Rojas, E.Mier, J.Angstrom, E.Moreno
compound		source
Molecule: Light Chain Of Antibody 14f7 Chain: L Fragment: Fab,Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse, Mouse Organism_taxid: 10090 Strain: Balbc Cell_line: 14f7 Hybridoma Cells Other_details: 14f7 Mab Purified From 14f7 Hybridoma Cells
Molecule: Heavy Chain Of Antibody 14f7 Chain: H Fragment: Fab,Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse, Mouse Organism_taxid: 10090 Strain: Balbc Cell_line: 14f7 Hybridoma Cells Other_details: 14f7 Mab Purified From 14f7 Hybridoma Cells Fragment Prepared Using Papain Digestion
symmetry	Space Group: P 21 21 21	R_factor 0.181 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.500 78.900 121.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
related structures	by homologous chain: 1CIC, 1EAP, 1FDL, 1IC4, 2BFV
Gene Ontology	Chain Function Process Component L
Primary reference	Structure and molecular interactions of a unique antitumor antibody specific for N-glycolyl GM3., Krengel U, Olsson LL, Martinez C, Talavera A, Rojas G, Mier E, Angstrom J, Moreno E, J Biol Chem 2004 Feb 13;279(7):5597-603. Epub 2003 Nov 19. PMID:14627696

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (1rih.pdb1.gz) 68 Kb CSU: Contacts of Structural Units for 1RIH Likely Quarternary Molecular Structure file(s) for 1RIH Structure Factors (184 Kb) Retrieve 1RIH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RIH from S2C, [Save to disk] Re-refined 1rih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RIH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RIH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RIH, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rihh1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1rihh2, region H:114-215 [Jmol] [rasmolscript] [script source]     - Domain d1rihl1, region L:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1rihl2, region L:108-212 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rih] [1rih_L] [1rih_H] SWISS-PROT database: [P01837] [Q569W9] Domain organization of [IGKC_MOUSE] [Q569W9_MOUSE] by SWISSPFAM Domains found in 1RIH: [IG_like] [IGv ] by SMART

Other resources with information on 1RIH

Community annotation for 1RIH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---