1RJY	Immune System	date	Nov 20, 2003
title	Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed Wit Microglobulin And Herpes Simplex Virus Glycoprotein B Pepti
authors	M.J.Miley, I.Messaoudi, J.Nikolich-Zugich, D.H.Fremont
compound		source
Molecule: H-2 Class I Histocompatibility Antigen, K-B Alpha Chain: A, D Fragment: Extracellular Domain Synonym: H-2kb Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: H2-K Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Beta-2-Microglobulin Chain: B, E Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: B2m Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Glycoprotein B Chain: P, Q Engineered: Yes		Synthetic: Yes Organism_scientific: Herpes Simplex Virus Organism_taxid: 126283 Other_details: Naturally Occuring Sequence In Herpes Simple
symmetry	Space Group: P 1 21 1	R_factor 0.229 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.562 90.137 89.077 90.00 111.39 90.00
method	X-Ray Diffraction	resolution	1.90 Å
related structures	by homologous chain: 1HSB, 2BNR
Gene Ontology	Chain Function Process Component E, B
Primary reference	Structural basis for the restoration of TCR recognition of an MHC allelic variant by peptide secondary anchor substitution., Miley MJ, Messaoudi I, Metzner BM, Wu Y, Nikolich-Zugich J, Fremont DH, J Exp Med 2004 Dec 6;200(11):1445-54. Epub . PMID:15557346

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk] Biological Unit Coordinates (1rjy.pdb1.gz) 69 Kb Biological Unit Coordinates (1rjy.pdb2.gz) 69 Kb CSU: Contacts of Structural Units for 1RJY Likely Quarternary Molecular Structure file(s) for 1RJY Retrieve 1RJY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RJY from S2C, [Save to disk]

View 1RJY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RJY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RJY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rjya2, region A:1-181 [Jmol] [rasmolscript] [script source]     - Domain d1rjya1, region A:182-278 [Jmol] [rasmolscript] [script source]     - Domain d1rjyb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1rjyd2, region D:1-181 [Jmol] [rasmolscript] [script source]     - Domain d1rjyd1, region D:182-278 [Jmol] [rasmolscript] [script source]     - Domain d1rjye_, region E [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rjy_P] [1rjy_B] [1rjy_A] [1rjy] [1rjy_E] [1rjy_Q] [1rjy_D] SWISS-PROT database: [P01887] [P06436] [P01901] Domain organization of [B2MG_MOUSE] [GB_HHV1F] [HA1B_MOUSE] by SWISSPFAM Domain found in 1RJY: [IGc1 ] by SMART

Other resources with information on 1RJY

Community annotation for 1RJY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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