1RNJ	Hydrolase	date	Dec 01, 2003
title	Crystal Structure Of Inactive Mutant Dutpase Complexed With Analogue Imido-Dutp
authors	O.Barabas, V.Pongracz, J.Kovari, M.Wilmanns, B.G.Vertessy
compound		source
Molecule: Deoxyuridine 5'-Triphosphate Nucleotidohydrolase Chain: A Synonym: Dutpase, Dutp Pyrophosphatase Ec: 3.6.1.23 Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Dut, Dnas, Sof, B3640 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: P 63 2 2	R_factor 0.157 R_Free 0.187
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.900 74.900 99.643 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	DUP, MG, TRS	enzyme	Hydrolase E.C.3.6.1.23 BRENDA
related structures	by homologous chain: 1DUP, 1SEH
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into the catalytic mechanism of phosphate ester hydrolysis by dUTPase., Barabas O, Pongracz V, Kovari J, Wilmanns M, Vertessy BG, J Biol Chem 2004 Jun 17;. PMID:15208312

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (1rnj.pdb1.gz) 81 Kb LPC: Ligand-Protein Contacts for 1RNJ CSU: Contacts of Structural Units for 1RNJ Likely Quarternary Molecular Structure file(s) for 1RNJ Structure Factors (235 Kb) Retrieve 1RNJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RNJ from S2C, [Save to disk] Re-refined 1rnj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RNJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RNJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RNJ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rnja_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rnj] [1rnj_A] SWISS-PROT database: [P06968] Domain organization of [DUT_ECOLI] by SWISSPFAM

Other resources with information on 1RNJ

Community annotation for 1RNJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---