1RQV Ribosome date Dec 07, 2003
title Spatial Model Of L7 Dimer From E.Coli With One Hinge Region State
authors E.V.Bocharov, A.G.Sobol, K.V.Pavlov, D.M.Korzhnev, V.A.Jaravine, A.T.Gudkov, A.S.Arseniev
compound source
Molecule: 50s Ribosomal Protein L7l12
Chain: A, B
Fragment: L7 Dimer
Synonym: L8
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppr1
methodSolution NMR
related structures by homologous chain: 1CTF, 1RQU
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFrom structure and dynamics of protein L7/L12 to molecular switching in ribosome., Bocharov EV, Sobol AG, Pavlov KV, Korzhnev DM, Jaravine VA, Gudkov AT, Arseniev AS, J Biol Chem 2004 Feb 11;. PMID:14960595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1rqv.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 1RQV
  • Original NMR restraints for 1RQV from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RQV from S2C, [Save to disk]
    • View 1RQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RQV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RQV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rqva1, region A:1-51 [Jmol] [rasmolscript] [script source]
        - Domain d1rqva2, region A:52-120 [Jmol] [rasmolscript] [script source]
        - Domain d1rqvb1, region B:1-51 [Jmol] [rasmolscript] [script source]
        - Domain d1rqvb2, region B:52-120 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rqv_A] [1rqv] [1rqv_B]
  • SWISS-PROT database: [P0A7K2]
  • Domain organization of [RL7_ECOLI] by SWISSPFAM
    • Other resources with information on 1RQV
  • Community annotation for 1RQV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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