1RUY	Viral Protein	date	Dec 12, 2003
title	1930 Swine H1 Hemagglutinin
authors	J.J.Skehel, S.J.Gamblin, L.F.Haire, R.J.Russell, D.J.Stevens, B.X N.Vasisht, D.A.Steinhauer, R.S.Daniels
compound		source
Molecule: Hemagglutinin Chain: H, J, L Other_details: Hemagglutinin Ha1 Chain		Organism_scientific: Influenza A Virus (Aswineiowa1530( Organism_taxid: 260809 Strain: A-Swine-Iowa-15-30 (H1n1) Other_details: Bromelain Digestion
Molecule: Hemagglutinin Chain: I, K, M Other_details: Hemagglutinin Ha2 Chain		Organism_scientific: Influenza A Virus (Aswineiowa1530( Organism_taxid: 260809 Strain: A-Swine-Iowa-15-30 (H1n1) Other_details: Bromelain Digestion
symmetry	Space Group: C 1 2 1	R_factor 0.248 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 203.106 83.279 178.234 90.00 106.67 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	NAG, NDG	enzyme
related structures	by homologous chain: 1EO8, 1HGH, 1RUZ, 1RVT
Gene Ontology	Chain Function Process Component H, J, L M, K, I
Primary reference	The structure and receptor binding properties of the 1918 influenza hemagglutinin., Gamblin SJ, Haire LF, Russell RJ, Stevens DJ, Xiao B, Ha Y, Vasisht N, Steinhauer DA, Daniels RS, Elliot A, Wiley DC, Skehel JJ, Science 2004 Mar 19;303(5665):1838-42. Epub 2004 Feb 5. PMID:14764886

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk] Biological Unit Coordinates (1ruy.pdb1.gz) 237 Kb LPC: Ligand-Protein Contacts for 1RUY CSU: Contacts of Structural Units for 1RUY Likely Quarternary Molecular Structure file(s) for 1RUY Retrieve 1RUY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RUY from S2C, [Save to disk]

View 1RUY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RUY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RUY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ruyh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1ruyi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1ruyj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1ruyk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1ruyl_, region L [Jmol] [rasmolscript] [script source]     - Domain d1ruym_, region M [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ruy_K] [1ruy_J] [1ruy_M] [1ruy_I] [1ruy_H] [1ruy_L] [1ruy] SWISS-PROT database: [Q9WCD9] [P18875] Domain organization of [HEMA_I30A0] [HEMA_I79A4] by SWISSPFAM

Other resources with information on 1RUY

Community annotation for 1RUY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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