1S6P	Transferase	date	Jan 26, 2004
title	Crystal Structure Of Human Immunodeficiency Virus Type 1 Rev Transcriptase (Rt) In Complex With Janssen-R100943
authors	K.Das, E.Arnold
compound		source
Molecule: Pol Polyprotein [Contains: Reverse Transcriptase] Chain: A Fragment: P66 Subunit Synonym: Hiv-1 Rt Ec: 2.7.7.49 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bh10 Isolate Other_details: Hiv-1 Clone 12
Molecule: Pol Polyprotein [Contains: Reverse Transcriptase] Chain: B Fragment: P51 Subunit Synonym: Hiv-1 Rt Ec: 2.7.7.49 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bh10 Isolate Other_details: Hiv-1 Clone 12
symmetry	Space Group: C 1 2 1	R_factor 0.245 R_Free 0.312
crystal cell	length a length b length c angle alpha angle beta angle gamma 226.700 67.400 104.300 90.00 107.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	IET, MG	enzyme	Transferase E.C.2.7.7.49 BRENDA
related structures	by homologous chain: 1RT4, 1SV5
Gene Ontology	Chain Function Process Component A B
Primary reference	Roles of conformational and positional adaptability in structure-based design of TMC125-R165335 (etravirine) and related non-nucleoside reverse transcriptase inhibitors that are highly potent and effective against wild-type and drug-resistant HIV-1 variants., Das K, Clark AD Jr, Lewi PJ, Heeres J, De Jonge MR, Koymans LM, Vinkers HM, Daeyaert F, Ludovici DW, Kukla MJ, De Corte B, Kavash RW, Ho CY, Ye H, Lichtenstein MA, Andries K, Pauwels R, De Bethune MP, Boyer PL, Clark P, Hughes SH, Janssen PA, Arnold E, J Med Chem 2004 May 6;47(10):2550-60. PMID:15115397

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk] Biological Unit Coordinates (1s6p.pdb1.gz) 165 Kb LPC: Ligand-Protein Contacts for 1S6P CSU: Contacts of Structural Units for 1S6P Likely Quarternary Molecular Structure file(s) for 1S6P Structure Factors (221 Kb) Retrieve 1S6P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1S6P from S2C, [Save to disk] Re-refined 1s6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1S6P in 3D

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Visual 3D analysis of 1S6P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1S6P, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1s6pa2, region A:1-429 [Jmol] [rasmolscript] [script source]     - Domain d1s6pa1, region A:430-552 [Jmol] [rasmolscript] [script source]     - Domain d1s6pb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1s6p_B] [1s6p_A] [1s6p] SWISS-PROT database: [P03366] Domain organization of [POL_HV1B1] by SWISSPFAM

Other resources with information on 1S6P

Community annotation for 1S6P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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