1S8N Structural Genomics, Unknown Function date Feb 03, 2004
title Crystal Structure Of Rv1626 From Mycobacterium Tuberculosis
authors J.P.Morth, V.Feng, L.J.Perry, D.I.Svergun, P.A.Tucker, Tb Structu Genomics Consortium (Tbsgc)
compound source
Molecule: Putative Antiterminator
Chain: A
Engineered: Yes
Other_details: Phosphorylation Dependent Transcriptional Antitermination Regulator
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Gene: Rv1626
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 43 21 2
R_factor 0.203 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.836 44.836 180.626 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand AZI enzyme
related structures by homologous chain: 1SD5
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Crystal and Solution Structure of a Putative Transcriptional Antiterminator from Mycobacterium tuberculosis., Morth JP, Feng V, Perry LJ, Svergun DI, Tucker PA, Structure (Camb) 2004 Sep;12(9):1595-605. PMID:15341725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1s8n.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1S8N
  • CSU: Contacts of Structural Units for 1S8N
  • Likely Quarternary Molecular Structure file(s) for 1S8N
  • Structure Factors (211 Kb)
  • Retrieve 1S8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S8N from S2C, [Save to disk]
  • Re-refined 1s8n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S8N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1S8N from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S8N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s8na_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s8n_A] [1s8n]
  • SWISS-PROT database: [O06143]
  • Domain organization of [PDTAR_MYCTU] by SWISSPFAM
  • Domains found in 1S8N: [ANTAR] [REC ] by SMART
  • Other resources with information on 1S8N
  • Community annotation for 1S8N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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