1SEV Oxidoreductase date Feb 18, 2004
title Mature And Translocatable Forms Of Glyoxysomal Malate Dehydr Have Different Activities And Stabilities But Similar Cryst Structures
authors B.R.Cox, M.M.Chit, T.M.Weaver, J.Bailey, C.Gietl, E.Bell, L.J.Bana
compound source
Molecule: Malate Dehydrogenase, Glyoxysomal Precursor
Chain: A, B
Ec: 1.1.1.37
Engineered: Yes
Organism_scientific: Citrullus Lanatus
Organism_taxid: 3654
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm105
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
symmetry Space Group: P 41 21 2
R_factor 0.207 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.800 96.800 213.318 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.37 BRENDA
related structures by homologous chain: 1SMK
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOrganelle and translocatable forms of glyoxysomal malate dehydrogenase. The effect of the N-terminal presequence., Cox B, Chit MM, Weaver T, Gietl C, Bailey J, Bell E, Banaszak L, FEBS J 2005 Feb;272(3):643-54. PMID:15670147
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1sev.pdb1.gz) 97 Kb
  • CSU: Contacts of Structural Units for 1SEV
  • Likely Quarternary Molecular Structure file(s) for 1SEV
  • Structure Factors (471 Kb)
  • Retrieve 1SEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SEV from S2C, [Save to disk]
  • Re-refined 1sev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SEV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SEV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sev_B] [1sev_A] [1sev]
  • SWISS-PROT database: [P19446]
  • Domain organization of [MDHG_CITLA] by SWISSPFAM
  • Other resources with information on 1SEV
  • Community annotation for 1SEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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