1SHN Hydrolase date Feb 26, 2004
title Crystal Structure Of Shrimp Alkaline Phosphatase With Phosph
authors M.M.E.De Backer, S.Mcsweeney, P.F.Lindley, E.Hough
compound source
Molecule: Alkaline Phosphatase
Chain: A, B
Ec: 3.1.3.1
 Organism_scientific: Pandalus Borealis
Organism_common: Northern Shrimp
Organism_taxid: 6703
symmetry Space Group: P 43 21 2
R_factor 0.186 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.676 170.677 83.925 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand NAG, PO4, SO4, ZN enzyme Hydrolase E.C.3.1.3.1 BRENDA
related structures by homologous chain: 1SHQ
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • alkaline phosphatase activit...
  • phosphatase activity


    • Primary referenceLigand-binding and metal-exchange crystallographic studies on shrimp alkaline phosphatase., de Backer MM, McSweeney S, Lindley PF, Hough E, Acta Crystallogr D Biol Crystallogr. 2004 Sep;60(Pt 9):1555-61. Epub 2004, Aug 26. PMID:15333925
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (1shn.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 1SHN
  • CSU: Contacts of Structural Units for 1SHN
  • Likely Quarternary Molecular Structure file(s) for 1SHN
  • Structure Factors (681 Kb)
  • Retrieve 1SHN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SHN from S2C, [Save to disk]
  • Re-refined 1shn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1SHN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SHN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SHN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1shna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1shnb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1shn_B] [1shn] [1shn_A]
  • SWISS-PROT database: [Q9BHT8]
  • Domain organization of [Q9BHT8_PANBO] by SWISSPFAM
  • Domain found in 1SHN: [alkPPc ] by SMART
    • Other resources with information on 1SHN
  • Community annotation for 1SHN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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