1SW8 Calcium-Binding Protein date Mar 30, 2004
title Solution Structure Of The N-Terminal Domain Of Human N60d Ca Refined With Paramagnetism Based Strategy
authors I.Bertini, C.Del Bianco, I.Gelis, N.Katsaros, C.Luchinat, G.Parig M.Peana, A.Provenzani, M.A.Zoroddu, Structural Proteomics In E (Spine)
compound source
Molecule: Calmodulin
Chain: A
Fragment: N-Terminal Domain
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand CA enzyme
related structures by homologous chain: 1SMG, 1SY9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExperimentally exploring the conformational space sampled by domain reorientation in calmodulin., Bertini I, Del Bianco C, Gelis I, Katsaros N, Luchinat C, Parigi G, Peana M, Provenzani A, Zoroddu MA, Proc Natl Acad Sci U S A 2004 May 4;101(18):6841-6. Epub 2004 Apr 20. PMID:15100408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (452 Kb) [Save to disk]
  • Biological Unit Coordinates (1sw8.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 1SW8
  • CSU: Contacts of Structural Units for 1SW8
  • Original NMR restraints for 1SW8 from PDB
  • Retrieve 1SW8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SW8 from S2C, [Save to disk]
    • View 1SW8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SW8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SW8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sw8a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sw8] [1sw8_A]
  • SWISS-PROT database: [P62158]
  • Belongs to the calmodulin calcium binding protein (calmodulin) family according to TCDB.
  • Domain organization of [CALM_HUMAN] by SWISSPFAM
  • Domain found in 1SW8: [EFh ] by SMART
    • Other resources with information on 1SW8
  • Community annotation for 1SW8 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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