1SZ6 Hydrolase Inhibitor date Apr 04, 2004
title Mistletoe Lectin I From Viscum Album. Crystal Structure At 2 Resolution
authors A.G.Gabdoulkhakov, N.E.Guhlistova, A.V.Lyashenko, R.Krauspenhaa S.Stoeva, W.Voelter, S.V.Nikonov, C.Betzel, A.M.Mikhailov
compound source
Molecule: Rrna N-Glycosidase A Chain
Chain: A
 Organism_scientific: Viscum Album
Organism_common: European Mistletoe
Organism_taxid: 3972

Molecule: Beta-Galactoside Specific Lectin I B Chain
Chain: B
Organism_scientific: Viscum Album
Organism_common: European Mistletoe
Organism_taxid: 3972
symmetry Space Group: P 65 2 2
R_factor 0.211 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.880 106.880 310.740 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand AZI, CL, GOL, NAG, SO4 enzyme
related structures by homologous chain: 1M2T, 1ONK
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1sz6.pdb1.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 1SZ6
  • CSU: Contacts of Structural Units for 1SZ6
  • Likely Quarternary Molecular Structure file(s) for 1SZ6
  • Structure Factors (645 Kb)
  • Retrieve 1SZ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SZ6 from S2C, [Save to disk]
  • Re-refined 1sz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1SZ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SZ6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SZ6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sz6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1sz6b1, region B:1-137 [Jmol] [rasmolscript] [script source]
        - Domain d1sz6b2, region B:138-263 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sz6] [1sz6_B] [1sz6_A]
  • SWISS-PROT database: [P81446]
  • Domain organization of [ML1_VISAL] by SWISSPFAM
  • Domain found in 1SZ6: [RICIN ] by SMART
    • Other resources with information on 1SZ6
  • Community annotation for 1SZ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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