1T2J Immune System date Apr 21, 2004
title Crystal Structure Of A Human Vh Domain
authors R.K.Gaur, R.Fischer, K.M.V.Hoffmann
compound source
Molecule: M12-Variable Heavy Domain
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psyn
symmetry Space Group: C 1 2 1
R_factor 0.158 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.336 37.965 37.187 90.00 109.67 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand PEG enzyme
related structures by homologous chain: 1Q9Q, 1XFP
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1t2j.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1T2J
  • CSU: Contacts of Structural Units for 1T2J
  • Likely Quarternary Molecular Structure file(s) for 1T2J
  • Structure Factors (267 Kb)
  • Retrieve 1T2J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T2J from S2C, [Save to disk]
  • Re-refined 1t2j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1T2J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T2J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T2J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t2j_A] [1t2j]
  • SWISS-PROT database: [Q9HCC1]
  • Domain organization of [Q9HCC1_HUMAN] by SWISSPFAM
  • Domain found in 1T2J: [IGv ] by SMART
    • Other resources with information on 1T2J
  • Community annotation for 1T2J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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