1T3U Structural Genomics, Unknown Function date Apr 27, 2004
title Unknown Conserved Bacterial Protein From Pseudomonas Aerugin
authors K.R.Rajashankar, R.Kneiwel, V.Solorzano, C.D.Lima, S.K.Burley, Ne Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Conserved Hypothetical Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pa01
Gene: Pa5227
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: T7
symmetry Space Group: P 41
R_factor 0.236 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.726 106.726 36.454 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand MSE enzyme
note 1T3U is a representative structure
related structures by homologous chain: 1W2E
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1t3u.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1T3U
  • CSU: Contacts of Structural Units for 1T3U
  • Likely Quarternary Molecular Structure file(s) for 1T3U
  • Structure Factors (410 Kb)
  • Retrieve 1T3U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T3U from S2C, [Save to disk]
  • Re-refined 1t3u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1T3U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T3U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T3U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t3ua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1t3ub_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1t3uc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1t3ud_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t3u] [1t3u_D] [1t3u_B] [1t3u_C] [1t3u_A]
  • SWISS-PROT database: [Q9HTW3]
  • Domain organization of [ZAPA_PSEAE] by SWISSPFAM
    • Other resources with information on 1T3U
  • Community annotation for 1T3U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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