1TPF Isomerase(Intramolecular Oxidoreductase) date Feb 28, 1994
title Comparison Of The Structures And The Crystal Contacts Of Try Triosephosphate Isomerase In Four Different Crystal Forms
authors K.V.Radha Kishan, J.Ph.Zeelen, R.K.Wierenga
compound source
Molecule: Triosephosphate Isomerase
Chain: A, B
Ec: 5.3.1.1
Engineered: Yes
 Organism_scientific: Trypanosoma Brucei Brucei
Organism_taxid: 5702
Strain: Brucei
symmetry Space Group: P 1
R_factor 0.199 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.080 53.450 64.710 92.27 74.63 116.74
method X-Ray Diffractionresolution 1.80 Å
ligand DMS enzyme Isomerase E.C.5.3.1.1 BRENDA
related structures by homologous chain: 1AMK, 1KV5
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceComparison of the structures and the crystal contacts of trypanosomal triosephosphate isomerase in four different crystal forms., Kishan KV, Zeelen JP, Noble ME, Borchert TV, Wierenga RK, Protein Sci 1994 May;3(5):779-87. PMID:8061607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1tpf.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 1TPF
  • CSU: Contacts of Structural Units for 1TPF
  • Likely Quarternary Molecular Structure file(s) for 1TPF
  • Retrieve 1TPF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TPF from S2C, [Save to disk]
    • View 1TPF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TPF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TPF, from MSDmotif at EBI
  • Genome occurence of 1TPF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tpfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tpfb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tpf] [1tpf_B] [1tpf_A]
  • SWISS-PROT database: [P04789]
  • Domain organization of [TPIS_TRYBB] by SWISSPFAM
    • Other resources with information on 1TPF
  • Community annotation for 1TPF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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