1U1V Isomerase, Lyase date Jul 16, 2004
title Structure And Function Of Phenazine-Biosynthesis Protein Phz Pseudomonas Fluorescens 2-79
authors W.Blankenfeldt, A.P.Kuzin, T.Skarina, Y.Korniyenko, L.Tong, P.Bay P.Janning, L.S.Thomashow, D.V.Mavrodi
compound source
Molecule: Phenazine Biosynthesis Protein Phzf
Chain: A
Engineered: Yes
 Organism_scientific: Pseudomonas Fluorescens
Organism_taxid: 294
Gene: Phzf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta Plys S
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 32 2 1
R_factor 0.130 R_Free 0.153
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.260 56.260 156.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand GOL, MSE, SO4 enzyme
related structures by homologous chain: 1T6K, 1U1W
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens., Blankenfeldt W, Kuzin AP, Skarina T, Korniyenko Y, Tong L, Bayer P, Janning P, Thomashow LS, Mavrodi DV, Proc Natl Acad Sci U S A 2004 Nov 23;101(47):16431-6. Epub 2004 Nov 15. PMID:15545603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1u1v.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 1U1V
  • CSU: Contacts of Structural Units for 1U1V
  • Likely Quarternary Molecular Structure file(s) for 1U1V
  • Structure Factors (221 Kb)
  • Retrieve 1U1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U1V from S2C, [Save to disk]
  • Re-refined 1u1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1U1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U1V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U1V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u1va1, region A:1-128 [Jmol] [rasmolscript] [script source]
        - Domain d1u1va2, region A:129-278 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u1v_A] [1u1v]
  • SWISS-PROT database: [Q51792]
  • Domain organization of [PHZF_PSEFL] by SWISSPFAM
    • Other resources with information on 1U1V
  • Community annotation for 1U1V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science