1U73 Hydrolase date Aug 02, 2004
title Crystal Structure Of A Dimeric Acidic Platelet Aggregation Inhibitor And Hypotensive Phospholipase A2 From Bothrops Jararacussu
authors A.J.Magro, M.T.Murakami, A.M.Soares, R.K.Arni, M.R.Fontes
compound source
Molecule: Hypotensive Phospholipase A2
Chain: A, B
Ec: 3.1.1.4
 Organism_scientific: Bothrops Jararacussu
Organism_common: Jararacussu
Organism_taxid: 8726
Other_details: Venom Glands
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.193 63.136 47.407 90.00 102.30 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Hydrolase E.C.3.1.1.4 BRENDA
related structures by homologous chain: 1M8R, 1UMV
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • toxin activity


    • Primary referenceCrystal structure of an acidic platelet aggregation inhibitor and hypotensive phospholipase A(2) in the monomeric and dimeric states: insights into its oligomeric state., Magro AJ, Murakami MT, Marcussi S, Soares AM, Arni RK, Fontes MR, Biochem Biophys Res Commun 2004 Oct 8;323(1):24-31. PMID:15351695
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1u73.pdb1.gz) 46 Kb
  • CSU: Contacts of Structural Units for 1U73
  • Likely Quarternary Molecular Structure file(s) for 1U73
  • Retrieve 1U73 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U73 from S2C, [Save to disk]
    • View 1U73 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U73
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U73, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u73a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1u73b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u73_A] [1u73_B] [1u73]
  • SWISS-PROT database: [Q8AXY1]
  • Domain organization of [Q8AXY1_BOTJR] by SWISSPFAM
  • Domain found in 1U73: [PA2c ] by SMART
    • Other resources with information on 1U73
  • Community annotation for 1U73 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science