4V4F The structure of the trp RNA-binding attenuation protein (TRAP) bound to a RNA molecule containing UAGAU repeats date
authors Hopcroft, N.H., Manfredo, A., Wendt, A.L., Brzozowski, A.M., Gollnick, P., Antson, A.A.
compound source
symmetry
R_factor
R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
note 4V4F supersedes 1UTF, 1UTV
Gene
Ontology
ChainFunctionProcessComponent
BQ, AC, BC, BB, AT, BN, AO, AD, BG, BS, AF, BJ, BU, BL, AB, BO, AU, BP, AL, BE, AA, AJ, AS, AV, BF, BI, AM, AH, BM, AG, BK, AP, BV, BH, AI, BT, AR, AQ, AN, BR, AE, BA, AK, BD


Primary referenceThe interaction of RNA with TRAP: the role of triplet repeats and separating spacer nucleotides., Hopcroft NH, Manfredo A, Wendt AL, Brzozowski AM, Gollnick P, Antson AA, J Mol Biol. 2004 Apr 16;338(1):43-53. PMID:15050822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (536 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4F
  • Structure Factors (1779 Kb)
  • Retrieve 4V4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4F from S2C, [Save to disk]
    • View 4V4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V4F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4f_BL] [4v4f_AI] [4v4f_BE] [4v4f_A7] [4v4f_A3] [4v4f_BQ] [4v4f_BU] [4v4f_BA] [4v4f_A6] [4v4f_BN] [4v4f_AN] [4v4f_AQ] [4v4f_BD] [4v4f_BR] [4v4f_A5] [4v4f_AV] [4v4f_AD] [4v4f_B5] [4v4f_BT] [4v4f_B2] [4v4f_BO] [4v4f_AK] [4v4f_B8] [4v4f_BH] [4v4f_AZ] [4v4f] [4v4f_BM] [4v4f_B7] [4v4f_A0] [4v4f_AH] [4v4f_A2] [4v4f_BK] [4v4f_AF] [4v4f_AE] [4v4f_BI] [4v4f_AM] [4v4f_B6] [4v4f_AR] [4v4f_BZ] [4v4f_A4] [4v4f_BF] [4v4f_BV] [4v4f_AP] [4v4f_A9] [4v4f_A8] [4v4f_AJ] [4v4f_B9] [4v4f_AL] [4v4f_AA] [4v4f_B3] [4v4f_AB] [4v4f_AU] [4v4f_B1] [4v4f_B0] [4v4f_AS] [4v4f_BP] [4v4f_BC] [4v4f_BB] [4v4f_AT] [4v4f_BG] [4v4f_AO] [4v4f_A1] [4v4f_BJ] [4v4f_AG] [4v4f_AC] [4v4f_B4] [4v4f_BS]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4V4F
  • Community annotation for 4V4F at PDBWiki (http://pdbwiki.org)

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