1V02	Hydrolase	date	Mar 22, 2004
title	Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
authors	J.Moriniere, L.Verdoucq, D.R.Bevan, A.Esen, B.Henrissat, M.Czjzek
compound		source
Molecule: Dhurrinase Chain: A, B, C, D, F Synonym: Dhurrinase-1 Ec: 3.2.1.21 Engineered: Yes		Organism_scientific: Sorghum Bicolor Organism_common: Sorghum Organism_taxid: 4558 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dhurrinase Chain: E Synonym: Dhurrinase-1 Ec: 3.2.1.21 Engineered: Yes		Organism_scientific: Sorghum Bicolor Organism_common: Sorghum Organism_taxid: 4558 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31	R_factor 0.172 R_Free 0.210
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.050 101.050 279.050 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand		enzyme	Hydrolase E.C.3.2.1.21 BRENDA
related structures	by homologous chain: 1V08
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural determinants of substrate specificity in family 1 beta-glucosidases: novel insights from the crystal structure of sorghum dhurrinase-1, a plant beta-glucosidase with strict specificity, in complex with its natural substrate., Verdoucq L, Moriniere J, Bevan DR, Esen A, Vasella A, Henrissat B, Czjze M, J Biol Chem. 2004 Jul 23;279(30):31796-803. Epub 2004 May 17. PMID:15148317

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (564 Kb) [Save to disk] Biological Unit Coordinates (1v02.pdb1.gz) 189 Kb Biological Unit Coordinates (1v02.pdb2.gz) 189 Kb Biological Unit Coordinates (1v02.pdb3.gz) 189 Kb CSU: Contacts of Structural Units for 1V02 Likely Quarternary Molecular Structure file(s) for 1V02 Structure Factors (4046 Kb) Retrieve 1V02 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V02 from S2C, [Save to disk] Re-refined 1v02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V02 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V02

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1V02, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v02a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1v02b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1v02c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1v02d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1v02e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1v02f_, region F [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v02_A] [1v02_D] [1v02_B] [1v02_C] [1v02_E] [1v02] [1v02_F] SWISS-PROT database: [Q41290] Domain organization of [Q41290_SORBI] by SWISSPFAM

Other resources with information on 1V02

Community annotation for 1V02 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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