1V03	Hydrolase	date	Mar 22, 2004
title	Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
authors	J.Moriniere, L.Verdoucq, D.R.Bevan, A.Esen, B.Henrissat, M.Czjzek
compound		source
Molecule: Dhurrinase Chain: A Synonym: Dhurrinase-1 Ec: 3.2.1.21 Engineered: Yes Mutation: Yes		Organism_scientific: Sorghum Bicolor Milo Organism_common: Sorghum Organism_taxid: 4558 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 41 3 2	R_factor 0.187 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 195.490 195.490 195.490 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	BGC, CCN, IPH	enzyme	Hydrolase E.C.3.2.1.21 BRENDA
related structures	by homologous chain: 1E55, 1H49
Gene Ontology	Chain Function Process Component A
Primary reference	Structural determinants of substrate specificity in family 1 beta-glucosidases: novel insights from the crystal structure of sorghum dhurrinase-1, a plant beta-glucosidase with strict specificity, in complex with its natural substrate., Verdoucq L, Moriniere J, Bevan DR, Esen A, Vasella A, Henrissat B, Czjze M, J Biol Chem. 2004 Jul 23;279(30):31796-803. Epub 2004 May 17. PMID:15148317

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (1v03.pdb1.gz) 178 Kb LPC: Ligand-Protein Contacts for 1V03 CSU: Contacts of Structural Units for 1V03 Likely Quarternary Molecular Structure file(s) for 1V03 Structure Factors (1256 Kb) Retrieve 1V03 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V03 from S2C, [Save to disk] Re-refined 1v03 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V03 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V03

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1V03, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v03a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v03] [1v03_A] SWISS-PROT database: [Q41290] Domain organization of [Q41290_SORBI] by SWISSPFAM

Other resources with information on 1V03

Community annotation for 1V03 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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