1VFZ	Transport Protein	date	Apr 19, 2004
title	Crystal Structure Of The Kif1a Motor Domain Complexed With A
authors	R.Nitta, M.Kikkawa, Y.Okada, N.Hirokawa
compound		source
Molecule: Protein (Fusion Protein Consisting Of Kinesin-Lik Kif1a, Kinesin Heavy Chain Isoform 5c And A His Tag; Chain: A Fragment: Motor Domain Of Kinesin-Like Protein Kif1a And Re 329-334 Of Kinesin Heavy Chain Isoform 5c; Synonym: Axonal Transporter Of Synaptic Vesicles Engineered: Yes Other_details: Fusion Protein Comprises Residues 1-355 Of K Like Protein Kif1a, And Residues 329-334 Of Kinesin Heavy C Isoform 5c, And C-Terminal Tail With Sequence Hhhhh		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21b
symmetry	Space Group: P 21 21 21	R_factor 0.215 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.471 51.805 156.992 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.24 Å
ligand	ADP, MG, VO4	enzyme
related structures	by homologous chain: 1I5S, 1VFW
Gene Ontology	Chain Function Process Component A
Primary reference	KIF1A alternately uses two loops to bind microtubules., Nitta R, Kikkawa M, Okada Y, Hirokawa N, Science 2004 Jul 30;305(5684):678-83. PMID:15286375

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (1vfz.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 1VFZ CSU: Contacts of Structural Units for 1VFZ Likely Quarternary Molecular Structure file(s) for 1VFZ Structure Factors (189 Kb) Retrieve 1VFZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VFZ from S2C, [Save to disk] Re-refined 1vfz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VFZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VFZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VFZ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vfza_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vfz] [1vfz_A] SWISS-PROT database: [P33173] [P28738] Domain organization of [KIF1A_MOUSE] [KIF5C_MOUSE] by SWISSPFAM Domain found in 1VFZ: [KISc ] by SMART

Other resources with information on 1VFZ

Community annotation for 1VFZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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