1VZ5 Oxidoreductase date May 14, 2004
title Succinate Complex Of Atsk
authors I.Mueller, A.C.Stueckl, I.Uson, M.Kertesz
compound source
Molecule: Putative Alkylsulfatase Atsk
Chain: A, B, C, D
Other_details: Atsk-Succinate Complex
 Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Strain: S-313
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.514 145.815 158.788 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand SIN enzyme
related structures by homologous chain: 1OII, 1OIJ
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSuccinate complex crystal structures of the alpha-ketoglutarate-dependent dioxygenase AtsK: steric aspects of enzyme self-hydroxylation., Muller I, Stuckl C, Wakeley J, Kertesz M, Uson I, J Biol Chem. 2005 Feb 18;280(7):5716-23. Epub 2004 Nov 12. PMID:15542595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (1vz5.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 1VZ5
  • CSU: Contacts of Structural Units for 1VZ5
  • Likely Quarternary Molecular Structure file(s) for 1VZ5
  • Structure Factors (1335 Kb)
  • Retrieve 1VZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VZ5 from S2C, [Save to disk]
  • Re-refined 1vz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VZ5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VZ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vz5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vz5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1vz5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1vz5d_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vz5] [1vz5_D] [1vz5_C] [1vz5_A] [1vz5_B]
  • SWISS-PROT database: [Q9WWU5]
  • Domain organization of [Q9WWU5_PSEPU] by SWISSPFAM
    • Other resources with information on 1VZ5
  • Community annotation for 1VZ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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