1WE5 Hydrolase date May 24, 2004
title Crystal Structure Of Alpha-Xylosidase From Escherichia Coli
authors T.Ose, M.Kitamura, M.Okuyama, H.Mori, A.Kimura, N.Watanabe, M.Yao,
compound source
Molecule: Putative Family 31 Glucosidase Yici
Chain: A, B, C, D, E, F
Synonym: Alpha-Xylosidase
Ec: 3.2.1.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yici
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrc99a
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.337 174.791 209.629 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MES, MSE enzyme Hydrolase E.C.3.2.1 BRENDA
related structures by homologous chain: 1XSK
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (764 Kb) [Save to disk]
  • Biological Unit Coordinates (1we5.pdb1.gz) 750 Kb
  • LPC: Ligand-Protein Contacts for 1WE5
  • CSU: Contacts of Structural Units for 1WE5
  • Likely Quarternary Molecular Structure file(s) for 1WE5
  • Structure Factors (1989 Kb)
  • Retrieve 1WE5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WE5 from S2C, [Save to disk]
  • Re-refined 1we5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WE5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WE5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WE5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1we5_D] [1we5_F] [1we5_B] [1we5_A] [1we5_E] [1we5] [1we5_C]
  • SWISS-PROT database: [P31434]
  • Domain organization of [XYLS_ECOLI] by SWISSPFAM
  • Other resources with information on 1WE5
  • Community annotation for 1WE5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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