1WLH Structural Protein date Jun 27, 2004
title Molecular Structure Of The Rod Domain Of Dictyostelium Filam
authors G.M.Popowicz, R.Mueller, A.A.Noegel, M.Schleicher, R.Huber, T.A.H
compound source
Molecule: Gelation Factor
Chain: A, B
Fragment: Repeat 4,5,6 Rod Domain
Synonym: Actin Binding Protein 120, Abp-120, Ddfilamin
Engineered: Yes
Organism_scientific: Dictyostelium Discoideum
Organism_taxid: 44689
Gene: Abpc
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7 , Ecori-Sali
symmetry Space Group: P 1 21 1
R_factor 0.257 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.320 61.670 119.030 90.00 104.10 90.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1KSR, 1QFH
Primary referenceMolecular structure of the rod domain of dictyostelium filamin., Popowicz GM, Muller R, Noegel AA, Schleicher M, Huber R, Holak TA, J Mol Biol 2004 Oct 1;342(5):1637-46. PMID:15364587
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1wlh.pdb1.gz) 92 Kb
  • CSU: Contacts of Structural Units for 1WLH
  • Likely Quarternary Molecular Structure file(s) for 1WLH
  • Retrieve 1WLH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WLH from S2C, [Save to disk]
  • View 1WLH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WLH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WLH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wlha1, region A:547-647 [Jmol] [rasmolscript] [script source]
        - Domain d1wlha2, region A:648-749 [Jmol] [rasmolscript] [script source]
        - Domain d1wlha3, region A:750-857 [Jmol] [rasmolscript] [script source]
        - Domain d1wlhb1, region B:549-647 [Jmol] [rasmolscript] [script source]
        - Domain d1wlhb2, region B:648-749 [Jmol] [rasmolscript] [script source]
        - Domain d1wlhb3, region B:750-857 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wlh_A] [1wlh] [1wlh_B]
  • SWISS-PROT database: [P13466]
  • Domain organization of [GELA_DICDI] by SWISSPFAM
  • Domain found in 1WLH: [IG_FLMN ] by SMART
  • Other resources with information on 1WLH
  • Community annotation for 1WLH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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