1WSE Hydrolase date Nov 05, 2004
title Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant ( With Mn2+
authors Y.Tsunaka, K.Takano, H.Matsumura, Y.Yamagata, S.Kanaya
compound source
Molecule: Ribonuclease Hi
Chain: A, B
Synonym: Rnase Hi, Ribonuclease H, Rnase H
Ec: 3.1.26.4
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pjal600
symmetry Space Group: P 2 2 21
R_factor 0.230 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.041 66.008 79.485 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MN enzyme Hydrolase E.C.3.1.26.4 BRENDA
related structures by homologous chain: 1RDD, 1WSF
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification of single Mn(2+) binding sites required for activation of the mutant proteins of E.coli RNase HI at Glu48 and/or Asp134 by X-ray crystallography., Tsunaka Y, Takano K, Matsumura H, Yamagata Y, Kanaya S, J Mol Biol 2005 Feb 4;345(5):1171-83. Epub 2004 Dec 16. PMID:15644213
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1wse.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (1wse.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 1WSE
  • CSU: Contacts of Structural Units for 1WSE
  • Likely Quarternary Molecular Structure file(s) for 1WSE
  • Retrieve 1WSE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WSE from S2C, [Save to disk]
  • View 1WSE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WSE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WSE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wse_A] [1wse] [1wse_B]
  • SWISS-PROT database: [P0A7Y4]
  • Domain organization of [RNH_ECOLI] by SWISSPFAM
  • Other resources with information on 1WSE
  • Community annotation for 1WSE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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