1WXD	Oxidoreductase	date	Jan 21, 2005
title	Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From T Thermophilus Hb8
authors	B.Bagautdinov, N.Kunishima, Riken Structural Genomicsproteomi Initiative (Rsgi)
compound		source
Molecule: Shikimate 5-Dehydrogenase Chain: A, B Synonym: Aroe Ec: 1.1.1.25 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Gene: Aroe Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 21 21 21	R_factor 0.204 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.027 71.606 113.125 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ACT, SO4	enzyme	Oxidoreductase E.C.1.1.1.25 BRENDA
related structures	by homologous chain: 1GZ6, 1TU5
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of shikimate dehydrogenase AroE from Thermus thermophilus HB8 and its cofactor and substrate complexes: insights into the enzymatic mechanism., Bagautdinov B, Kunishima N, J Mol Biol. 2007 Oct 19;373(2):424-38. Epub 2007 Aug 21. PMID:17825835

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (1wxd.pdb1.gz) 90 Kb LPC: Ligand-Protein Contacts for 1WXD CSU: Contacts of Structural Units for 1WXD Likely Quarternary Molecular Structure file(s) for 1WXD Structure Factors (257 Kb) Retrieve 1WXD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WXD from S2C, [Save to disk] Re-refined 1wxd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WXD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WXD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WXD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wxd_A] [1wxd] [1wxd_B] SWISS-PROT database: [Q5SJF8] Domain organization of [AROE_THET8] by SWISSPFAM

Other resources with information on 1WXD

Community annotation for 1WXD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---