1XF3 Immune System date Sep 13, 2004
title Structure Of Ligand-Free Fab Dna-1 In Space Group P65
authors J.P.Schuermann, S.P.Prewitt, S.L.Deutscher, J.J.Tanner
compound source
Molecule: Fab Light Chain
Chain: L, A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fab Heavy Chain
Chain: H, B
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.208 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
201.751 201.751 44.781 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 1K4D, 1LO3, 1M7D, 1RZ8
Primary referenceEvidence for structural plasticity of heavy chain complementarity-determining region 3 in antibody-ssDNA recognition., Schuermann JP, Prewitt SP, Davies C, Deutscher SL, Tanner JJ, J Mol Biol 2005 Apr 15;347(5):965-78. PMID:15784256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (1xf3.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (1xf3.pdb2.gz) 67 Kb
  • CSU: Contacts of Structural Units for 1XF3
  • Likely Quarternary Molecular Structure file(s) for 1XF3
  • Structure Factors (355 Kb)
  • Retrieve 1XF3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XF3 from S2C, [Save to disk]
  • Re-refined 1xf3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1XF3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XF3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XF3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xf3_A] [1xf3] [1xf3_B] [1xf3_L] [1xf3_H]
  • SWISS-PROT database: [P01837]
  • Domain organization of [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 1XF3: [IG_like] [IGv ] by SMART
    • Other resources with information on 1XF3
  • Community annotation for 1XF3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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