1XUP	Transferase	date	Oct 26, 2004
title	Enterococcus Casseliflavus Glycerol Kinase Complexed With Gl
authors	J.I.Yeh, V.Charrier, J.Paulo, L.Hou, E.Darbon, W.G.J.Hol, J.Deutsc
compound		source
Molecule: Glycerol Kinase Chain: O, X Synonym: Atp:Glycerol 3-Phosphotransferase, Glycerokinase, Ec: 2.7.1.30 Engineered: Yes		Organism_scientific: Enterococcus Casseliflavus Organism_taxid: 37734 Gene: Glpk Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Poxo4
symmetry	Space Group: P 21 21 21	R_factor 0.242 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.010 107.670 201.450 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.75 Å
ligand	GOL	enzyme	Transferase E.C.2.7.1.30 BRENDA
related structures	by homologous chain: 1R59
Gene Ontology	Chain Function Process Component O, X
Primary reference	Structures of enterococcal glycerol kinase in the absence and presence of glycerol: correlation of conformation to substrate binding and a mechanism of activation by phosphorylation., Yeh JI, Charrier V, Paulo J, Hou L, Darbon E, Claiborne A, Hol WG, Deutscher J, Biochemistry 2004 Jan 20;43(2):362-73. PMID:14717590

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk] Biological Unit Coordinates (1xup.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 1XUP CSU: Contacts of Structural Units for 1XUP Likely Quarternary Molecular Structure file(s) for 1XUP Retrieve 1XUP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XUP from S2C, [Save to disk]

View 1XUP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XUP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XUP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1xupo2, region O:257-491 [Jmol] [rasmolscript] [script source]     - Domain d1xupo1, region O:6-256 [Jmol] [rasmolscript] [script source]     - Domain d1xupx2, region X:257-491 [Jmol] [rasmolscript] [script source]     - Domain d1xupx1, region X:6-256 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xup_O] [1xup] [1xup_X] SWISS-PROT database: [O34153] Domain organization of [GLPK_ENTCA] by SWISSPFAM

Other resources with information on 1XUP

Community annotation for 1XUP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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